As the holidays approach, I find myself yearning for the comforting aroma of freshly baked cookies wafting through my kitchen. That’s when I decided to whip up these delightful Almond Flour Thumbprint Cookies, a recipe that perfectly marries the warmth of tradition with a modern gluten-free twist. The first bite reveals a tender, slightly chewy texture infused with nutty goodness, and who could resist that vibrant dollop of jam right in the center?
What I love most about these cookies is their versatility—perfect for afternoon snacks or holiday gatherings, they’re not only simple to make but also great fun to create with kids. With just a handful of wholesome ingredients like almond flour and maple syrup, I can guarantee that they’ll become a family favorite. Each colorful jam filling bursts with flavor, making every nibble a little celebration. Let’s dive into this easy recipe that promises to enchant your taste buds and impress your friends!
Why love Almond Flour Thumbprint Cookies?
Simplicity at Its Best: With just a few wholesome ingredients, this recipe is a breeze to whip up, making it perfect for all skill levels.
Kid-Friendly Fun: These cookies are a great way to involve your little chefs in the kitchen, creating memories with every colorful jam-filled thumbprint.
Versatile Treats: Customize your cookies with different jams or nut flours, ensuring there’s a flavor for everyone in the family.
Perfect for Any Occasion: Ideal for holiday cookie trays or as an afternoon snack, they pair beautifully with coffee or tea.
Nutty and Sweet: The combination of almond flour and maple syrup provides a unique flavor profile that is both satisfying and delightful, making each bite a treat!
Almond Flour Thumbprint Cookies Ingredients
For the Cookie Dough
• Maple Syrup – Adds natural sweetness to balance the nuttiness; honey or agave syrup can be used as a substitute.
• Almond Flour – Provides structure and a fine texture essential for gluten-free cookies; use only blanched almond flour for optimal results.
• Vanilla Extract – Enhances the overall flavor profile; aim for pure vanilla extract for the best results.
• Apple Cider Vinegar – Activates baking powder and helps provide a light texture; can be omitted if absent.
• Salt – Enhances flavors and balances sweetness; essential in baked goods.
• Almond Extract – Provides a deeper almond flavor; may be reduced or omitted if desired.
• Baking Powder – Leavening agent essential for cookie rise; ensure freshness for the best effect.
• Coconut Oil – Keeps cookies tender and moist; must be cooled slightly before mixing. Substitute with unsalted butter if preferred.
For the Filling
• Jam (Raspberry or Other) – Fills the thumbprint, providing a fruity flavor; any fruit jam or chocolate spread is acceptable and brings that delightful touch to your Almond Flour Thumbprint Cookies.
How to Make Almond Flour Thumbprint Cookies
Preheat your oven to 350°F (175°C) and line a baking sheet with parchment paper. This sets the stage for perfect baking!
Mix the almond flour, baking powder, and salt together in a bowl. Stir until well combined and free of lumps.
Whisk together the cooled melted coconut oil, maple syrup, vanilla extract, almond extract, and apple cider vinegar in a separate bowl. This blend will create a lovely, aromatic dough!
Combine the wet and dry ingredients to form a dough that should hold together but feel slightly moist—get ready for some cookie magic!
Scoop the dough using a cookie scoop, forming 1-inch balls, and roll them gently between your palms.
Space the dough balls on the prepared baking sheet, gently pressing your thumb into each to make a small well for the jam.
Fill each well with about 1/2 teaspoon of jam, making sure not to overfill. This is where the fruity burst will shine!
Bake for 12-14 minutes, or until the edges turn golden and the centers are slightly underbaked—trust your senses!
Cool the cookies on the baking sheet for 5 minutes before transferring them to a wire rack to cool completely. Enjoy the anticipation!
Optional: Drizzle with melted dark chocolate for an added touch of indulgence.
Exact quantities are listed in the recipe card below.

Expert Tips for Almond Flour Thumbprint Cookies
Dough Consistency: Ensure your dough is slightly moist but holds together well; too dry may lead to crumbling cookies, while moist dough can become sticky.
Proper Jam Filling: Use just enough jam (about 1/2 teaspoon) to avoid overflowing during baking; this keeps your Almond Flour Thumbprint Cookies looking perfect.
Cooling Coconut Oil: Let the melted coconut oil cool slightly before mixing to prevent cooking the eggs or altering the dough texture.
Pressing Technique: Wait until cookies are slightly set before pressing your thumb into the dough; this will prevent cracks and ensure a lovely thumbprint.
Ingredient Freshness: Always use fresh almond flour and baking powder for the best rise; age can impact the texture and overall success of your cookies.
Storing Tips: For maximum flavor and freshness, store your cookies in an airtight container in a cool place, and enjoy within a week!
Make Ahead Options
These Almond Flour Thumbprint Cookies are perfect for meal prep enthusiasts seeking to save time during busy weeks! You can prepare the cookie dough up to 24 hours in advance by mixing the wet and dry ingredients, then refrigerating the formed dough balls until you’re ready to bake. To maintain the cookies’ texture, keep the dough covered tightly in plastic wrap to prevent it from drying out. When you’re ready to serve, just preheat the oven and bake the cookies as directed, filling the thumbprints with jam shortly before baking to ensure a fresh burst of flavor. With this simple prep method, you’ll enjoy delightful, freshly baked cookies with minimal effort!
Storage Tips for Almond Flour Thumbprint Cookies
Room Temperature: Store in an airtight container at room temperature for up to 5 days to maintain their fresh and tender texture.
Fridge: To extend freshness, refrigerate your cookies in an airtight container for up to 2 weeks; they’ll still taste delicious!
Freezer: For long-term storage, freeze Almond Flour Thumbprint Cookies for up to 3 months. Seal in freezer-safe bags or containers, and thaw at room temperature when ready to enjoy.
Reheating: If you prefer warm cookies, reheat in a 350°F oven for 5-7 minutes; they’ll regain their delightful softness.
What to Serve with Almond Flour Thumbprint Cookies?
These delightful cookies deserve the perfect pairing to elevate your snack or dessert experience.
Rich Hot Chocolate: A velvety hot chocolate enhances the nutty flavors while adding a cozy, sweet drink option to your tasty cookies.
Fresh Berries: A mix of strawberries, raspberries, or blueberries provides a fresh, tangy contrast, balancing the sweetness of the thumbprint cookies.
Creamy Almond Milk: This nutty beverage complements the almond flavor and makes for a soothing drink that rounds out your treat beautifully.
Vanilla Ice Cream: A scoop of vanilla ice cream adds a creamy richness, creating a delightful combination when paired with warm cookies fresh out of the oven.
Decaf Herbal Tea: A soothing cup of chamomile or mint tea offers a calming finish, great for a quiet afternoon with a sweet treat.
Fruit Salad: A vibrant mix of melons, citrus, and berries brings a refreshing burst of flavor, making each bite lighter and wonderful alongside the cookies.
Almond Flour Thumbprint Cookies Variations
Customize these delightful cookies to suit your taste and occasion!
Nut-Free: Replace almond flour with sunflower seed flour for a delicious, nut-free alternative that keeps the flavor intact.
Sweetener Swap: Use honey or agave syrup instead of maple syrup for a different kind of sweetness, perfect if you’re out of maple.
Jam Variety: Try different jams like strawberry or apricot for a fun twist; the flavor combinations are endless!
Spiced Cookies: Add a pinch of cinnamon or nutmeg to the dough for a warm, spiced flavor that is especially cozy during the holidays.
Coconut Crunch: Stir in toasted coconut flakes to the dough for an added layer of texture and tropical taste.
Chocolate Lovers: Bark in some dark chocolate chips for a decadent twist that complements the sweet jam beautifully.
Vegan Option: Replace the coconut oil with vegetable oil and use a vegan butter substitute for a fully plant-based version that everyone can enjoy.
Heat It Up: Infuse some cayenne pepper into the dough for those who enjoy a little kick with their sweetness; it’s a unique surprise in every bite!

Almond Flour Thumbprint Cookies Recipe FAQs
What kind of almond flour should I use for Almond Flour Thumbprint Cookies?
Absolutely! It’s best to use blanched almond flour for optimal results, as it provides a fine texture essential for gluten-free cookies. If you only have unblanched almond flour on hand, the cookies will still work, but the texture might be a bit grittier.
How do I store Almond Flour Thumbprint Cookies to keep them fresh?
Very simple! Store your cookies in an airtight container at room temperature for up to 5 days. If you want to extend their freshness, you can refrigerate them for up to 2 weeks. Just make sure to keep them sealed well to avoid drying out!
Can I freeze Almond Flour Thumbprint Cookies?
Yes, you can! For long-term storage, freeze your cookies in freezer-safe bags or containers for up to 3 months. To thaw, simply place them at room temperature for about 30 minutes. If you’d like them warm, reheat them in a preheated 350°F oven for 5-7 minutes after thawing to bring back their delightful softness.
What should I do if my dough feels too sticky?
If you find your dough becoming too sticky, I recommend working quickly and keeping your hands dusted with a little almond flour while rolling. Also, ensure that the coconut oil is cooled enough before mixing—it should be in a liquid state but not hot. You can chill the dough in the refrigerator for about 15-20 minutes to help it firm up, making it easier to scoop.
Are these cookies safe for people with nut allergies?
Unfortunately, no. These Almond Flour Thumbprint Cookies contain almond flour and almond extract, which are not safe for individuals with nut allergies. However, you could experiment using a different nut-free flour like oat flour, but the texture and flavor will differ. Always consult with your loved ones regarding dietary restrictions before baking!
What kinds of jams can I use for the filling?
The more, the merrier! While raspberry jam is a classic choice, feel free to experiment with other fruit jams—think strawberry, apricot, or even lemon curd. You can even use your favorite chocolate spread for a delightful twist! Each offering will give a unique flavor that makes each batch special.

Delicious Almond Flour Thumbprint Cookies Your Family Will Love
Ingredients
Equipment
Method
- Preheat your oven to 350°F (175°C) and line a baking sheet with parchment paper.
- Mix the almond flour, baking powder, and salt together in a bowl.
- Whisk together the cooled melted coconut oil, maple syrup, vanilla extract, almond extract, and apple cider vinegar in a separate bowl.
- Combine the wet and dry ingredients to form a dough that holds together but feels slightly moist.
- Scoop the dough using a cookie scoop, forming 1-inch balls.
- Space the dough balls on the prepared baking sheet, gently pressing your thumb into each to make a small well for the jam.
- Fill each well with about 1/2 teaspoon of jam.
- Bake for 12-14 minutes until the edges turn golden and the centers are slightly underbaked.
- Cool the cookies on the baking sheet for 5 minutes before transferring them to a wire rack.










